This vignette demonstrates how to set up conda environment for
aurora. This will allow you to use log regression and AdaBoost
in function aurora_pheno(). The function that sets up the
environment (setup_conda()) has no input and only one
output which is the path to the conda environment. This path then has to
be specified in function aurora_pheno().
library(aurora)
# set up conda environment using packaged .yaml file
conda_path <- setup_conda() # make sure that the path is in this format: /path/to/dir
# now you can use the path in aurora_pheno() and log regression and AdaBoost will be run
results <- aurora_pheno(pheno_mat = pheno_mat,
bin_mat = bin_mat,
tree = tree,
condaenv_path = conda_path,
save_dir = "/path/to/save/dir")